Package: RPatternJoin 1.0.0

RPatternJoin: String Similarity Joins for Hamming and Levenshtein Distances

This project is a tool for words edit similarity joins (a.k.a. all-pairs similarity search) under small (< 3) edit distance constraints. It works for Levenshtein/Hamming distances and words from any alphabet. The software was originally developed for joining amino-acid/nucleotide sequences from Adaptive Immune Repertoires, where the number of words is relatively large (10^5-10^6) and the average length of words is relatively small (10-100).

Authors:Daniil Matveev [aut, cre], Martin Leitner-Ankerl [ctb, cph], Gene Harvey [ctb, cph]

RPatternJoin_1.0.0.tar.gz
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RPatternJoin.pdf |RPatternJoin.html✨
RPatternJoin/json (API)
NEWS

# Install 'RPatternJoin' in R:
install.packages('RPatternJoin', repos = c('https://matveevdaniil.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/matveevdaniil/rpatternjoin/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

2.30 score 4 scripts 12 downloads 2 exports 2 dependencies

Last updated 1 months agofrom:8a10c4b2f3. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 27 2024
R-4.5-win-x86_64OKOct 27 2024
R-4.5-linux-x86_64OKOct 27 2024
R-4.4-win-x86_64OKOct 27 2024
R-4.4-mac-x86_64OKOct 27 2024
R-4.4-mac-aarch64OKOct 27 2024
R-4.3-win-x86_64OKOct 27 2024
R-4.3-mac-x86_64OKOct 27 2024
R-4.3-mac-aarch64OKOct 27 2024

Exports:edit_dist1_examplesimilarityJoin

Dependencies:RcppRcppArmadillo