Package: RPatternJoin 1.0.0

RPatternJoin: String Similarity Joins for Hamming and Levenshtein Distances

This project is a tool for words edit similarity joins (a.k.a. all-pairs similarity search) under small (< 3) edit distance constraints. It works for Levenshtein/Hamming distances and words from any alphabet. The software was originally developed for joining amino-acid/nucleotide sequences from Adaptive Immune Repertoires, where the number of words is relatively large (10^5-10^6) and the average length of words is relatively small (10-100).

Authors:Daniil Matveev [aut, cre], Martin Leitner-Ankerl [ctb, cph], Gene Harvey [ctb, cph]

RPatternJoin_1.0.0.tar.gz
RPatternJoin_1.0.0.zip(r-4.7)RPatternJoin_1.0.0.zip(r-4.6)RPatternJoin_1.0.0.zip(r-4.5)
RPatternJoin_1.0.0.tgz(r-4.6-x86_64)RPatternJoin_1.0.0.tgz(r-4.6-arm64)RPatternJoin_1.0.0.tgz(r-4.5-x86_64)RPatternJoin_1.0.0.tgz(r-4.5-arm64)
RPatternJoin_1.0.0.tar.gz(r-4.7-arm64)RPatternJoin_1.0.0.tar.gz(r-4.7-x86_64)RPatternJoin_1.0.0.tar.gz(r-4.6-arm64)RPatternJoin_1.0.0.tar.gz(r-4.6-x86_64)
RPatternJoin_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
RPatternJoin/json (API)
NEWS

# Install 'RPatternJoin' in R:
install.packages('RPatternJoin', repos = c('https://matveevdaniil.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/matveevdaniil/rpatternjoin/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

2.00 score 6 scripts 570 downloads 2 exports 2 dependencies

Last updated from:8a10c4b2f3. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK156
linux-devel-x86_64OK158
source / vignettesOK183
linux-release-arm64OK157
linux-release-x86_64OK152
macos-release-arm64OK156
macos-release-x86_64OK291
macos-oldrel-arm64OK204
macos-oldrel-x86_64OK320
windows-develOK191
windows-releaseOK153
windows-oldrelOK145
wasm-releaseOK117

Exports:edit_dist1_examplesimilarityJoin

Dependencies:RcppRcppArmadillo